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NPR Science: February 21

February 26, 2011 in Teaching Resources

Week of February 21, 2011

Click on the logo above to go the the NPR Science site, or use the links below to navigate to one of the stories that I thought may interest you.

Enjoy listening!

Neat, new way to preserve insects for biology classrooms

February 22, 2011 in Labs, Nature, Teaching Resources

From http://dragonflywoman.wordpress.com

Click on this image or this link to Dragonflywoman’s blog to learn how to preserve insects in hand sanitizer….what a cool way to prepare insect specimens for the classroom.

http://dragonflywoman.wordpress.com/2011/02/21/hand-sanitizer-preservation/

BTW,  you’ll find a lot of great insect resources on her web site.  I think you’ll be impressed.

NPR Science: February 14

February 19, 2011 in Teaching Resources

Week of February 14, 2011

Click on the logo above to go the the NPR Science site, or use the links below to navigate to one of the stories that I thought may interest you.

Last week, I showed my students my most recent NPR post and allowed them to pick the story title that most interested them to watch and talk about at the beginning of class.  They picked the video on the Meat-Eating Furniture and were quite intrigued.  Then, I showed them James Randi’s video on Homeopathy.  None of them had heard of homeopathic treatments but they appreciated being educated regarding the difference between these treatments and drugs that have been through FDA approval.

Happy listening!

Becoming Naked and Clothed

February 17, 2011 in Teaching Resources

Exploring Human Evolution and Culture through the Study of Lice.

Yesterday evening I took the time to watch Nova Science NOW hosted by Neil DeGrasse Tyson.  Although I enjoyed the entire program, I was especially intrigued by the segment on the research of David Reed at the University of Florida’s Natural History Museum.

This segment discusses how molecular comparisons of our clothing, head, and pubic lice with the head and pubic lice found in chimpanzees and gorillas, respectively were used to infer the time when modern humans began wearing clothing, and when ancestral humans lost most of our hair.  With so much in the news lately about the diversity of human microbe flora, etc… this research could provide a clear example of the distinct niches that are found on the human body.

Watch the 11 minute segment at the Nova ScienceNOW, and then read the summary article In Lice, Clues to Human Origin and Attire from the New York Times, or download and read pdf’s of the scientific research below.

  1. Origin of Clothing Lice Indicates Early Clothing Use by Anatomically Modern Humans in Africa from the journal of Molecular Biology and Evolution.
  2. Pair of lice lost or parasites regained: the evolutionary history of anthropoid primate licefrom BioMed Central
  3. A list and some links to other publications can be found at Dr. Reed’s website.

I think this would make a great bioinformatics/molecular clock activity as well.

I Teach Evolution! Do You?

February 12, 2011 in Teaching Resources

Earlier this week, I scrolled upon the above post on my twitter account, followed the link to the New York Times article On Evolution, Biology Teachers Stray From Lesson Plan (duplicate post that you don’t have to login in to read) by Nicholas Bakalar, and read… 

Here’s was struck by…

  • “Only 28% of biology teachers consistently describe straightforwardly the evidence for evolution and explain the ways in which it is a unifying theme in all of biology.”   So, 72% of biology teachers don’t do this?  Could this be true?
  • “13 percent explicitly advocate creationism.”  So, 59% may accept evolution in some manner but just don’t teach it?  Wow!
  • It’s hard to be optimistic, but Eric Plutzer, one of the authors of Defeating Creationism in the Courtroom, But Not in the Classroom (the research being cited in the NY Times article) stated that, “We think the ‘cautious 60 percent’ represent a group of educators who, if they were better trained in science in general and in evolution in particular, would be more confident in their ability to explain controversial topics to their students, to parents, and to school board members.”

… this sad commentary reported during the week of Charles Darwin’s 202nd birthday! 

So, is there anything that we can do as a KABT community to help “better train” biology teachers in science and evolution? 

I really don’t know, but I thought I could at least share some of what I have done to teach evolution during my 18 years in the freshman biology classroom.

Below, I relate the general structure of the freshman biology courses that I have taught, and the introductory setting that I tried to establish.  These brief comments are followed by the first of a series of activities (other will be presented in future posts) which I have used to provoke a thoughtful and respectful discussion of the biological concept of race.  After I finish with the series of posts on biological race, I will think about backing up and filling you in on some of the other activities, discussion, homework assignments, etc… that I used to teach the fundamental concepts of natural selection and speciation.

Course Perspective

I don’t claim to have expert knowledge of evolution, nor do I have special abilities when it comes to teaching evolution, but I can demonstrate that at least 25% of my class time in freshman biology was spent learning about evolution.   Two of my 8 units, over the course of the year, were devoted to the topic, and I integrated the evolutionary perspective into some course work during my previous units on classification, ecology, as well as subsequent units on cell biology, cell energetics, molecular biology, and genetics.  The activities that I will be presenting in this, and subsequent posts, were some of the culminating activites my students completed at the end of my unit on genetics second semester. 

Thus, it is safe to say that I generally accept Theodosius Dobzhansky’s claim that, “Nothing in biology makes sense except in the light of evolution.”

Introductory Setting for Teaching Evolutionary Biology

Like many biology teachers, I began the school year establishing the difference between science and non-science through a few lessons where we covered concepts including empirical and rational epistemologies, observation, discovery-based and hypothesis-based science, and theory.  One of my lessons was motivated by Brad Williamson, who introduced me to the Secret of the Psychics Nova video and the accompanying con he used to perform on his students (more on that later). 

One important goal of this introductory material was to set the appropriate tenor in the classroom.  Although I have never had a single significant distracting classroom experience involving creationism with students or their parents, I thought it was important to develop a standard for what constitutes science from the beginning so that if later issues popped-up, they could be judged against this pre-established standard.

The Biology of Race and Inequality

This first of a series of activities was conducted at the very end of the school year at the end of my unit on genetics after having covered standard Mendelian genetics and content associated with inheritance in humans.

Lesson 1 - Comparing Chimpanzees using mtDNA Sequences

Background – In the early summer of 2002, I attended a Dolan DNA Learning Center workshop at the Stowers Institute where a group of biology instructors were introduced to one wet lab and a number of bioinformatics activities associated with their new educational program called Genetic Origins.  Scott Bronson and Ewe Hilgert ran the workshop that specifically introduced us to the study of mitochondrial (mt) DNA and Alu genomic elements.

Objective- To introduce students to the concept of subspecies through study of the geographic distribution of chimpanzee populations and a comparison of  mtDNA from some of these isolated populations, in an effort to prime them for a discrepant event with regard to a similar activity involving humans (they may even remember that Linneaus had segregated humans into distinct categories as well, although I would not have reminded them of this directly).

Introducing the Activity - When starting things off, I most would commonly show a map of the ranges of the subspecies of chimpanzee found in Africa (above).  I would prompt the students to remember what we learned about scientific names from first semester (we had only learned about bionomials not trinomials), and proceed in having them hypothesize why these populations of chimpanzees were given distinct three word names.  It was pretty clear to most students that the trinomials may represent a single species that has recently begun to develop geographically isolated populations.  I would likewise prompt them to remember what we had discovered about processes of speciation (we had already learned about allopatric speciation and pre and post-zygotic isolating mechanisms), and have then hypothesize differences that may exist within mitochondrial DNA samples taken from three of the subspecies (see the activity below). 

Once some thoughts had been generated, I would model the procedure in the activity that follows, making sure that students understood how to cut the mtDNA sequences from the supplemental document below and successfully paste them into the appropriate online sequence alignment tools.  Realize 1) that other alignment tools could be used (I always had problems with the Dolan Center’s online tools and googled this one up years ago) and 2) one can actually speed things up by pasting all the sequences at once.  I usually showed the students the short cut later when we discussed their answers at the end of the class period or the following day.  I imagine that using the slower process actually gave them time to think about the data as it was processed resulting in more thoughtful answers.  In a subsequent activity with human mtDNA sequences, I would allow them to use the short cut because they would then have a good enough understanding of significance of what they were doing.

Let everyone know if you have any questions or general words of advice in response to things said.  Otherwise, thanks for your attention, and I will be talking to you again soon!

Happy Birthday Chuck!

NPR Science: February 7

February 11, 2011 in Teaching Resources

Week of February 7, 2011

Click on the logo above to go the the NPR Science site, or use the links below to navigate to one of the stories that I thought may interest you.

Human Genome 10th Anniversary: Science’s Special

February 11, 2011 in Teaching Resources

In February 2001, Science and Nature published two papers that provided the first detailed look at the nearly complete sequence of the human genome. Science is pleased to present a special month-long series celebrating the 10th anniversary of that momentous achievement, including News features and brief essays that explore the impacts of the genomics revolution on scientists and society.

Visit this special section of the online issue of Science by clicking on the image above, or view and save a pdf copy of the two parts of the series that have been published so far.  Each pdf contains a collection of brief essays that should be assessible by most high school biology students.

NPR Science – January 31, 2011

February 5, 2011 in KABT News, Nature, Teaching Resources

Week of January 31, 2011

Click on the logo above to go the the NPR Science site, or use the links below to navigate one of the stories that I thought may interest you.

I tried to embed these videos for snow day viewing pleasure but I couldn’t.  All of these videos are about the snowflake research conducted by Dr. Ken Libbrecht, a Caltech physicist.

Dipity: Create an Online Timeline

February 4, 2011 in Teaching Resources, Technology

Recently, I have been following Ed Yong on Twitter and was intrigued by his post, Research into reprogrammed stem cells at his blog, Not Exactly Rocket Science, housed on the Discover Magazine website. 

What intrigued me? 

Well, the “timeline” that he created for this post using the online generator at Dipity

I assumed that this online tool was pretty user friendly and I took a short time tonight to create a sample timeline containing one-event (Ed’s contains 25 with links to his history of blog posts on the topic), and a 3-page document with directions and screen shots for Creating a Timeline using Dipity.  For those that have used the Dolan DNA Learning Center’s DNAi website timeline to support student understanding of the history of molecular biology, Dipity will allow your students to demonstrate higher level learning through creating their own understanding of such history.

I don’t know what I am going to have my students create yet but this is definitely a tool worth exploring, and I am certain that students will have an enjoyable time being creative with Dipity. 

Enjoy!

American Scientist: Pizza Lunch Podcast

February 4, 2011 in Teaching Resources, Technology

 

 

 

 

 

American Scientist Pizza Lunches are informal lectures where scientists present new research to an audience of non-scientists.  The talks are hosted in Research Triangle Park, North Carolina, at the headquarters of Sigma Xi, the Scientific Research Society, the publisher of American Scientist magazine.  Originally intended to help inform local science communicators about current and controversial topics, the Pizza Lunch talks are now available to anyone online, and new talks are posted periodically during the academic year.

Download individual talks through following the links below (clicking on the image above will take you to the general Pizza Lunch Podcast website).

  1. Whole Genome Analysis in the Clinic
    James Evans, clinical researcher in genetics at the University of North Carolina
    Evans urges us to support genomics medicine research but asks us to temper our enthusiasm until it becomes a proven tool. (April 20, 2010)
  2. Genomic and Personalized Medicine
    Geoffrey Ginsburg, director of the Center for Genomic Medicine, Duke University
    Ginsburg presents advances and ongoing research in personalized medicine, from prescribing cancer drugs to predicting flu symptoms. (March 30, 2010)
  3. Metapopulation Dynamics of Oyster Restoration in Pamlico Sound, NC
    David Eggleston, director of the Center for Marine Science and Technology, North Carolina State University
    Eggleston discusses the challenges of conserving and restoring North Carolina coastal ecosystems, particularly oyster reefs. (January 26, 2010) 
  4. An Empire Lacking Food: The Astonishing Existence of Life on the Deep Seafloor
    Craig McClain, assistant director of science, National Evolutionary Synthesis Center

    McClain explores how the meager availability of food on the deep seafloor shapes the ecology and evolution of the animals that live there. (December 15, 2009)
  5. The Evolution of the Human Capacity for Killing at a Distance
    Steven Churchill, professor of evolutionary anthropology, Duke University
    Churchill presents his research on the evolutionary origins of projectile weaponry, and how weapon use changed interactions between humans and other species—including, perhaps, the Neandertals. (October 20, 2009)
  6. Our Energy Future: Science and Technology Challenges for the 21st Century
    Thomas Meyer, director, Solar Energy Research Center, University of North Carolina, Chapel Hill
    Meyer discusses the status of the world’s energy supply. In particular, he presents the idea that the sun’s energy could be used to make fuels from water and carbon dioxide for heating, transportation and energy storage. (September 24, 2009)
  7. Everything Is Dangerous: A Controversy
    S. Stanley Young, director of bioinformatics, National Institute of Statistical Sciences
    Young critiques statistical analysis by some epidemiologists, especially their multiple testing of data sets obtained from observational studies. (April 22, 2009)
  8. From Cloning to Stem Cells: How Can Pigs Help Us Solve Problems in Human Medicine?
    Jorge Piedrahita, professor of genomics, North Carolina State University College of Veterinary Medicine

    Piedrahita describes his research with cloned swine and how their abnormal growth provides insight into human placental defects, the ways transgenic pigs may help grow human tissue and how pigs could help advance stem cell therapies. (March 25, 2009)

I discovered this site via a twitter link today and thought it might provide another means of bringing scientists, although virtually, into the classroom.  Otherwise, if you don’t have a subscription to the American Scientist, it is one of my favorite periodicals.