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NPR Science – January 24

January 28, 2011 in KABT News, Teaching Resources

Week of January 24, 2011

Click on the logo above to go the the NPR Science site, or use the links below to navigate one of the stories that I thought may interest you.

and here is a new YouTube video of a song…

Enjoy!

How Evolution Gave Us The Human Edge

January 22, 2011 in Teaching Resources, Technology

Click on the image above to access this unique NPR Resources containing

  • 4 Interactives on Brewing a Human, An Upright Primer, Lost Cousins and Fossil Forensics (the last two are a small portion of the Smithsonian Human Origins Initiative)
  • A collection of 20 NPR audio stories previously broadcast on Morning Edition or All Things Considered that provide an eclectic and pretty comprehensive prespective on human evolution.  Topics include, skin color, walking and running, tools and weapons, diet, brain development, talking and language, culuture and belief systems.

I have not used this resource in class having just noticed it while preparing my previous post on the NPR Science site.  If you have used it before and have particular suggestions on its integration please share your experiences with a comment.

NPR Science

January 22, 2011 in KABT News, Teaching Resources

Week of January 17, 2011

Click on the logo above to go the the NPR Science site, or use the links below to navigate one of the stories that may interest you.

I imagine that Brad could set up a permenant link for the NPR Science link on the KABT Blog Site but I wonder if it would just sit there unclicked.  He could likely add the apppropriate RSS feed as well which may inspire more use of their programing.  In the mean time, I figured that I might try to get in a weekly habit of posting NPR Science links that may appeal to KABT listeners.  If you would use this weekly feature, let me know via a comment.  Otherwise, I have no idea if this would be of use.

Although I occasionally share such stories in class, I am going to challenge myself to share each of audio stories above with my classes next week and see how they respond as well.  I’ll let you know how it goes with a comment next week.  These stories are good models for culminating work students could do to help them demonstrate understanding of particular topics of study while helping to popularize science as well.   If you already do such things in your classroom please share any thoughts, suggestions, etc… with a comment to this post.

Otherwise, if you have an iPhone, iPad, Android, etc… you should consider getting the NPR app.  I especially enjoy the NPR Science experience on the iPad.

New Language Discovered: Prairiedogese

January 20, 2011 in KABT News, Nature, Student Research Ideas, Teaching Resources

Reposted from NPR’s Morning Edition by Jad Abumrad and Robert Krulwich

If you learn a second language, there’s usually a moment where things click — you overhear some snippet of conversation and suddenly, you just get it, effortlessly.  Professor Con Slobodchikoff of Northern Arizona University has spent the past 30 years studying a foreign tongue. But there are no instructional podcasts or evening classes to help him: Slobodchikoff is trying to learn prairie dog.

View interactive media demonstrating some of the discoveries Dr. Slobodchikoff has made and listen to the 7 minute NPR Story at the following link.

http://www.npr.org/2011/01/20/132650631/new-language-discovered-prairiedogese

for those of you with access to prairie dogs colonies, it could be quite interesting to attempt to replicate Dr. Slobodchikoff’s.

Additional Links of Potential Interest

  • Video Clip on Dr. Slobodchikoff’s work from the BCC Program Prairie Dogs Talk of the Town

  • BBC Video Clip on Coyote Predation  Prairie Dogs

Google’s Body Browser

December 19, 2010 in KABT News, Teaching Resources, Technology

Vesalius would be Proud

This morning, while browsing through science related twitter posts, I became aware of Google Lab’s new Body Browser, at http://bodybrowser.googlelabs.com/

After downloading the Google Chrome browser, which appears to be required for the use of this website, I played around a bit, and took a few screen shots so that you could see what is available. 

The format is similar to Google Maps or Google Earth with regards to the clickable tool allowing one to zoom in and out, and to rotate left, right, up, and down.  Underneath this tool, is a sliding bar with icons for the different systems of the  human body.  As one slides the bar vertically through the icons, the human body progressively displays each system with the current system becoming more transparent as you pass into the next.  The systems are not identified but correspond to the external body, muscular system, skeletal system, internal organs, circulatory system, and nervous system (see the screen shot images that follow).

External Body

Muscular System

Skeletal System

Internal Organs

Circulatory System

Nervous System

As you can see in the next two images, you can zoom, turn on labels at the bottom of the sliding bar, and select a particular labeled item of interest.  Once selected that item will be highlighted relative to the surrounding tissue.  At the moment there aren’t links to information about the particular body parts you select, but I imagine that that will be in a future version.  Click here if you want to give Google Labs feedback and suggest features that would be useful to you.

Nervous System zoomed in on the Brain with Labels On

Image of the Obicularis Oculi muscle selected

Beside viewing the human body in the manner described above, one can selectively adjust the relative transparency of each layer at the same time as well.  To select this second option, click on the oval icon having three vertical lines, just above the labels selection.  Once completed, this displays a sliding bar for each system.  The following image is a screen shot showing such an image.

Viewing Multiple System Layers

While preparing this blog post, my 1st grade son said, ”We could see all this better if we cut open a person”. 

At first, I hestitated acknowledging the comment wondering if he had been exposed to too much violence on television.  But after a pause, he added, “The person could be dead already.” 

I asked, “Where could we get a dead person?”

He suggested, “A junk yard.” 

Having been to a funeral recently, I reminded him that most humans bury their dead, and that it would be against the law for one to dig up a grave.

I added though that Andreas Vesalius did just that in the 1500′s!

I imagine he might be proud of Google’s new Body Browser, as well as my son’s insight.

Looking for Research Collaboration with High School Biology Classrooms

October 26, 2010 in Student Research Ideas, Teaching Resources

My name is Joanna Cielocha. I am a Ph.D. candidate at the University of Kansas in the department of Ecology and Evolutionary Biology. My research focuses on parasites, particularly tapeworms of sharks and rays. I am interested in questions relating to diversity and interrelationships of these parasites.

I am in the process of writing a Doctoral Dissertation Improvement Grant to the National Science Foundation. The deadline for this application is November 12, 2010. Part of this grant application includes a “Broader Impacts” component for which I would like to collaborate with high school science teachers in Kansas. Ideally, this would involve teachers in a rural or “under-served” area (i.e., within a district where few students have pursued biology degrees in college or where these sorts of opportunities are not common). More importantly, I would like to work with high school science teachers that are interested and enthusiastic about broadening science education in Kansas high schools. I envision participation to include 2-3 guest visits to a classroom. These visits would include lectures and discussions with the class on topics that relate to current course material but may not receive detailed attention in the regular science curriculum: parasitology, biodiversity, and marine biology. A brief section introducing students to the topic of undergraduate research opportunities and research-track careers in science after college will also be incorporated.

The selected topics are derived from my current research experiences and interests. They would flow nicely in a course on the diversity of animals, but could be incorporated into other courses such as AP Biology, thus being most suitable for high school juniors and seniors. The parasitology portion would ideally focus on the diversity of the parasitic platyhelminths (tapeworms, flukes, and monogenes) found in Kansas, and also expanded to include those parasites found in and on sharks and rays. This topic would dovetail nicely into the topics of biodiversity and marine biology. Whereas marine parasites are highly enigmatic, with their diversity largely unknown and their life cycles involving a variety of other marine organisms. The final topic, research opportunities and careers, could also apply to a broader audience of students, if other science teachers in your school are interested.

This collaboration would take place during the 2011-2012 school year (Fall and/or Spring) given the course schedule, with the possibility of extending it into a second school year. I would be happy to speak with interested teachers to address questions and/or ideas regarding the development and feasibility of this collaboration.

Sincerely,

Joanna Cielocha

Joanna J. Cielocha
University of Kansas
Ph.D. Candidate
Dept. of Ecology and Evolutionary Biology
1200 Sunnyside Ave.
5024 Haworth Hall
Lawrence, KS 66045

email: jjcielocha@hotmail.com
phone: 785-864-5826

Photosynthesis Response Curve with Floating Disk Assay

October 23, 2010 in KABT News, Labs, Student Research Ideas, Teaching Resources

Over the years I’ve made the claim that the floating leaf disk assay is quite possibly the best way for students to explore how the process of photosynthesis. The method is inexpensive, accurate, reliably replicable and most importantly accessible for all levels of students from 5th grade to university. However, I’ve got to say that even I was surprised at some data I collected, yesterday. Recently, while working on new AP Biology Labs, I revisited the original (and still the best) paper that first discussed this technique. (or at least the earliest I can find.)

Wickliff, J. L., and R. M. Chasson. 1964. Measurement of photosynthesis in plant tissues using bicarbonate solutions. BioScience 14, no. 3: 32–33.

In this article I saw this graph of a photosynthesis light response curve that got me to thinking:

Last year, the UKanTeach program where I teach acquired a couple of PAR (photosynthetically active radiation) meters to measure photon flux. PAR meters are typically on the expensive side but this model from Apogee runs about $300. I hadn’t taken time to try them out and decided that now was the time.

Yesterday, I went out the north side of Haworth Hall and picked an ivy (Hedera helix) leaf that was growing in deep shade under a shrub.

English Ivy leaf, shade adapted

I picked a shade adapted leaf figuring that a leaf adapted to shade would likely reach photosaturation earlier than a sun adapted leaf. I wasn’t sure whether or not my light source was bright enough to induce photosaturation.

My light source is a clamp shop light with an 8 inch reflector and an 100 watt equivalent compact fluorescent bulb. Actually, I found that if I put my meter within a couple of inches of the bulb I can get a flux reading equivalent to a summer’s day. I was sure it was bright enough for the shade adapted leaf I had picked.

I modified the technique that I presented here by placing the infiltrated disks in shallow petri dishes instead of plastic cups. I also modified the data collection procedure. Instead of counting disks floating at the end of each minute, I actually attempted to time each disk–a bit of a challenge that I wasn’t quite up to the first time. I should have used a video camera or at least used a computer timer program capable of timing 10 or more “laps” or intervals.

Modified technique

It is real easy to record the first movements of the disks with this technique.

In low light conditions, I started by carefully cutting about 80 disks from one leaf. I then infiltrated ten disks at a time with a dilute bicarbonate solution with a vacuum created with a 10 ml syringe. I placed the 10 sunken disks in separate petri dishes with a total of 30 mls of bicarbonate solution. The dishes with the disks were then placed under a box lid to exclude any light. I then tested 6 of the sets of 10 disks under different light intensities. The data from the highest light intensity are not included because I neglected to use a water heat sink filter to keep the infiltration solution temperature constant. The higher temperatures affected the results. It was only when the light was very close to the petri dish that this was a problem but I need to account for this next time.

Here’s the results:

Note that I’ve plotted plus or minus two estimated Standard Errors for each mean. I was impressed. This is a classic response curve and the parameters of this curve are consistent with data reported in the literature for shade grown English Ivy. I’m more convinced than ever that the floating leaf disk assay is a very valuable tool for a biology teaching laboratory. With this technique students can start their exploration of photosynthesis but the same technique is powerful enough to explore more sophisticated concepts.

Free Topographic Maps through Google Earth

August 14, 2010 in Teaching Resources, Technology

MapFinder: A USGS Topographic Map Index

“MapFinder for Google Earth is a “.kmz” application that loads into Google Earth and shows the 7.5 minute quad USGS topographic map boundaries for the lower 48 states.  Each boundary has an identification point that givse you information about the USGS topo map.  This information includes the map name, scale, year, projection, and contour interval.  The most exciting feature of this application is that there is a download link that enables you to download the topographic map for free.”

Here are the steps:

  1. Download Google Earth at http://earth.google.com/download-earth.html.
  2. Download the MapFinder file at http://www.usgsquads.com/mapfinder.html.
  3. Browse to and open the “.kmz” file from within Google Earth.  When it opens, you will notice a menu within Google Earth that allows you to choose a state of interest.
  4. Once you have chosen a state, zoom in on that state and you will see the topographic map boundaries, each with a clickable blue information symbol.  Hover over a particular information symbol, and you will see the name of that topo map.  Upon clicking, a web page will open, where you will see a link to download a tiff file of that map.
  5. The tiff file is your free digital copy of the topographic map.

Have fun exploring the US digitally, but I hope these maps give you the knowledge to explore in the real world as well!

Something to do with Grass Clippings

August 1, 2010 in ID challenge, KABT News, Labs, Student Research Ideas, Teaching Resources

Early this morning, before the full heat of the day, I mowed the lawn.  Having left it to grow for two weeks, I had to stop more frequently to empty the bag onto our compost heap in the back yard.  Like many times before, I noticed that some flying insects were attracted to the new piles of grass clippings.  They hovered around like the hymenoptera in a recent post, but on a much smaller scale.  So, after finished my duties, I decided to observe for awhile and learn a little bit.  Here is what happened…

This is what this swarming looked like…

Then I witnessed this…

In this video you will see a mating pair just above the center of the screen.  After moving around a bit you will notice another individual pester the couple.  Not long after the couple parts.  What I believe to be the male, flies off, while the female can be seen wandering through the grass clippings.  In one instance you may be able to make out that her abdomen in curled.  I hypothesize that she was laying eggs amongst the grass.

Here is another, longer, mating video.  If you watch long enough, after the female is mounted and released a second time, it appears that the male might be guarding her from other males.  It makes me want to research an easy method of capturing, marking, and releasing these insects to be more certain about what is going on.

In this final image it appears we may possiblly have a sneaker male.  Interestingly enough, this additional male appears to be smaller than the male that is mounted upon the female.  Look at the cicrumferance of the eyes (although I know that the perspective is not the same).

There you have it.  I imagine that this could be quite an easy observation to reproduce, all you need is a pile of grass clippings, and some of these insects in the vicinity.  In fact, students could most likely complete such an observation from home on their own.  I did notice that these flies were amongst the grass clippings the whole day and were even there in smaller numbers the following morning as well. 

Furthermore, it was quite easy to figure out what insect species these are using Insects in Kansas Field Guide published by the Kansas Department of Agriculture. 

So, what is the Order, Family, and species of insect imaged in this post?

Synthetic Biology

July 18, 2010 in Student Research Ideas, Teaching Resources


The 21st Century Prometheans?

A little over a year ago, Brad posted a link to a survey on Synthetic Biology.  Although it appears that little has fundamentally changed since then, this burgeoning field, along side nanotechnology, has become front page news, and will hopefully become a topic of conversation in your biology class in the near future.

I don’t pretend to be an expert on Synthetic Biology but I thought a few resources may provide you with enough background knowledge to approach the topic with your students this year.  Maybe they could use this post itself as a springboard for discussion or more research.  The post is in three parts, each accompanied by some thought provoking quotes from Mary Shelley’s Frankenstein…

Early Years and Standford’s Drew Endy

In these links you will will find a reference to one of the first papers in the field, a few comic responses to the field, and links to two YouTube videos (originally TED Talks) of Drew Endy explaining the difference between Synthetic Biology and the more standard and familiar recombinant DNA and genetic engineering technologies.

“The world was to him a secret which he desired to divine. Curiosity, earnest research to learn the hidden laws of nature, gladness akin to rapture, as they were unfolded to him, are among the earliest sensations he can remember . . . It was the secrets of heaven and earth that he desired to learn; and whether it was the outward substance of things or the inner spirit of nature and the mysterious soul of man that occupied him, still his inquiries were directed to the metaphysical, or in it highest sense, the physical secrets of the world.”

  1. Synthetic Biology: Engineering Escherichia coli to see light (November 2005)
  2. Nature’s comic on Synthetic Biology (November 2005)
  3. The Story of Synthia - another comic look at synthetic biology
  4. Synthetic Biology Organization with a press link to numerous popular critiques of synthetic biology
  5. SEED’s Cribsheet on Synthetic Biology (July 2010)

(June 2007)

(December 2008)

Venter creates the News & President Obama’s Responds

“There was none among the myriads of men that existed who would pity or assist me; and should I feel kindness towards my enemies? No: from that moment I declared everlasting war against the species, and, more than all, against him who had formed me and sent me forth to this insupportable misery.”

(May 2010)

  1. The President’s Emerging Technologies Interagency Policy Coordination Committee’s Inaugural Meeting (May 2010)
  2. NPR Story, Presidential Panel Scrutinizes Synthetic Biology (July 2010)

Resources for those interested in Doing some Synthetic Biology

The following resources are for entering the field of Synthetic Biology.  The first link will introduce you to an annual competition used to motivate undergraduate teams of students to design and engineer novel pathways in E. coli.  If you search around, I think that you’ll find that there has been a single high school team involved in the competition before.  Some of university sponsors are quite interested in developing a kit to introduce students to the methods synthetic biology.

  1. iGEM 2010
  2. Authentic Teaching and Learning through Synthetic Biology based the E. coli engineered to sense light
  3. The BioBricks Foundation
  4. Registry of Standard Biological Parts
  5. BioBrick Assembly Kit from New England BioLabs

“‘The labours of men of genius, however erroneously directed, scarcely ever fail in ultimately turning to the solid advantage of mankind.”