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An experiment for the KABT BioBlog—social networking

9:47 am in KABT News by Brad Williamson

You’ll notice that things look a bit different around here.   I’ve added a lot of new capabilities to the KABT BioBlog website while keeping all of the previous work.   Over the last few months WordPress (the software that runs our blog) has introduced some new social networking tools.  With these tools this website/blog can now become somewhat like facebook—a place for people of like mind–a community that can more effectively collaborate and share ideas.  The new tool is called Buddypress.  You can find out a little here but the best way to find out is to use it.

As it says in the title–this is an experiment.  I’ll be tweaking things like appearance and options over the next few weeks.  I may add a wiki and other options as well.  If folks find that the new capabilities get in the way then we’ll just remove them and put up the old site.  Let me know what you think.  For now, I’ll leave it up (barring major problems) until the fall KABT meeting to give folks a chance to try it out.

BW

Ongoing Study Examines the Possible Versatility of Inquiry Education

5:07 pm in KABT News by Michael Ralph

A project that originated in Dodge City is exploring the impact a curriculum steeped in inquiry-based laboratories and activities can have on student learning and attitudes.

Animal Behavior Lab

While inquiry is a term heard often these days in science education, a move to inquiry activities as a primary mode of instruction would still be a cause for some sleepless nights to many teachers.  Shannon Ralph (a co-author within the program) is no different.  She has been teaching for 9 years in Dodge City, and would have been considered a fairly traditional teacher several years ago.  However, since then she has been converted heart and soul to an inquiry-style teacher.  She writes about her experience with the transition:

“It’s a little scary moving to a new teaching style when it is not the pedagogy I was taught.  What I have found however is that my students are more engaged, enjoy science more, AND learn the content!  It’s a win-win for us!”

Group Cooperation is Critical

The project was formally commissioned a year ago to re-develop a curriculum to be delivered to general biology students in the 10th grade.  With an honors program in place, the curriculum was designed for use by students in the lower two-thirds of the class.  In the fall of 2009, two teachers (a co-author of the program, Shannon, and a teacher unfamiliar with the project, Kevin) used the materials in two pilot classes.  The classes that would implement the curriculum were chosen at random from the catalogue.  Numerical data was gathered from Kevin and compared to other sections of general biology that he taught using traditional materials (the lessons he had used the previous year, largely unchanged).  Subjective data regarding student opinion was gathered from Shannon’s classroom in the form of written feedback and a video interview.  In addition, both teachers have provided anecdotal feedback and both classes participated in an interview with the building principle during the school year.

Can Beta Fish Learn?

The classroom methods implemented included inquiry laboratory experiences, hands-on activities, a technology rich environment, and contemporary approach to note taking.  53% of all class days include laboratory work.  When hands-on activities are added to the figure and assessments, assessment reviews, and a lab safety day are removed the “active learning day” percentage jumps to 81%.  To supplement the classroom environment, the students had daily access to netbooks (very small laptops).  They used the computers to access the class website for notes, handouts, or assignment turn-in.  They also used the Internet as a resource for projects, the classroom forum for class discussions, and to interact with computer models and simulations.  Finally, the class did not use a formal textbook.  Instead, the students are trained to take effective notes (and use them).  Lectures with note taking are limited to 20 minutes maximums, and PowerPoint slide counts to eight or less.  The slides present the important information as it should be recorded, and nothing more.  Students are allowed to listen to the lecture, because the noteworthy pieces have already been extracted for them.  Afterwards, the product they have is useful to them during labs and activities.

Teaching Beta Fish

Results from the initial semester are promising.  One section of Kevin’s class used the new materials and was compared to two of his sections using traditional materials.  The standardized test scores showed significant change.  On the district specific CRAs (criterion reference assessments), students that pass rose from an average of 41% of the class to 56%.  This is a move of two and a half standard deviations.  On the state assessments, the percentage of the class that achieves an advanced or exemplary score increased from 27% to 49%.  Both control classes had percentages of 27% and 28%.  While the sample size is unfortunately small, these results are at the very least promising.  The numbers are compared in the graph below.

Class Test Performance

The project’s prime directive was to make biology relevant to students.  The student feedback from the semester was overwhelmingly positive.  Students gushed on the written forms, and two volunteered for a video interview.  The principal commented after her interviews that most students responded multiple times during the class discussion, and all had great things to say about science.  The students also had great things to say about themselves and what they felt they could accomplish.  They felt they were working to, and meeting, “higher standards.”

Ecology Biomass Fieldwork

The early results indicate that all kinds of students can flourish in an inquiry environment.  Many students in these classes are students that a teacher may consider unable to handle an inquiry-heavy environment.  One student had already accumulated over 50 discipline referrals in his young career!  However, there were zero behavior problems in either class all semester.  The students indeed surpassed everyone’s expectations in almost every way possible.  This study is ongoing, but the early data indicates science educators may want to rethink who can or cannot benefit from an inquiry-rich environment.

Students Study Macromolecules

For a more complete description of the semester’s results, including the students’ interview and all written feedback forms, visit www.biologyrocks.org.  Kevin is using the inquiry-based materials in all of his courses this semester, and Shannon is using them in her honors courses.  As the results from this semester become available, they will be posted to the project website as well.  Next semester, a third cooperating teacher will begin using the materials in the same building.  The project would also like to work with a beta site for replication.  If you would like more information on the program, materials, or are interested in working with the project, visit the website or email mralph03@gmail.com.

KABT Spring Fieldtrip

6:01 pm in Field Trips, KABT News by bcoon352

KABT Field Trip
When: June 4 & 5
Where: Smoky Valley Ranch
Logan County in Western Kansas

Welcome to the 2010 KABT fieldtrip. This is open to all who enjoy biology, members and non-members, we have a very exciting trip planned to the Nature Conservancy and Haverfield Ranch.

The Smoky Valley Ranch (SVR) is located about 15 miles south of Monument, KS. Lodging for the trip is available at multiple locations. For the purposes of this trip KABT has been given permission to use the primitive bunkhouse located on the ranch. The bunkhouse has 8 beds and also has a bath; you are required to bring your own linens and bedroll. The bunkhouse space will be given on a first come first serve basis. We have been given the permission to camp at the ranch for the nights of June 4 and 5. Other nearby camping locations includes Scott State Lake, located south of the ranch. Hotel accommodations can be found an hour and a half away in Oakley, KS.

The association needs an idea of how many people to expect for the field trip we do ask that attendees RSVP with the number of people that they plan on bringing by emailing bcoon@usd352.k12.ks.us . Please put “KABT trip” in the subject line.

Directions to the SVR headquarters and bunkhouse: To access the Headquarters/bunkhouse: at the east intersection of US-40 & US-83 at the south edge of Oakley, go south on US-83 for 11 miles to Seneca Rd. There are a couple of communication towers there. Go west on Seneca 7 miles to the “T” intersection and turn south. Drive another 7 miles. The SVR Hq. “campus” will be in view and there will be a gate/lane on the left [east] and one ahead [south] that may be closed. Take the east lane and travel s.e. to the metal office/storage/maintenance building and turn right [west] and drive down the lane to the large, stone ranch house………the bunkhouse. The address is 1114 County Rd. 370, Oakley KS

What to bring:
First and foremost, it is highly suggested to have a full tank of gas. Other items to bring include cameras, binoculars, lawn chairs, hiking boots, a cooler of food for 3 meals, (Friday night, Saturday breakfast, and lunch), plenty of water, bug spray, and camping equipment.

Activities:
Friday evening: Meet at SVR for an evening of camaraderie with fellow KABT members.

Saturday: There are two hiking trails located on ranch, various groups will be formed based on biological interest and self-guided exploration of the area will take place. Near one of the hiking trails is a bison jump site. Also, the historic Butterfield Trail crosses the present ranch.

Possible sightings unique to western Kansas include: Prairie dogs, Prairie chickens, ferruginous hawks, Swift fox, Golden Eagles, Burrowing owls, Pronghorn, Prairie Rattlesnakes, short-grass prairie plant species, and at night the possibility of sighting black-footed ferrets on a nearby ranch (approximately 20 miles from Smoky Valley Ranch).

Saturday night: The plan is to meet at Mittens Truck Stop in Oakley, KS for a meal at 6:00, where we will eat (Dutch treat), and prepare for an evening of spotlighting the nocturnal black-footed ferret. Starting at 10-11:00 we will begin spotlighting at Haverfield Ranch.

Sunday Morning: disperse and head safely back to where you call home

For directions to the Smoky Valley Ranch see the nature conservancy website at

www.nature.org/wherewework/northamerica/states/kansas/preserves/art63.html

There is no charge for the day and non-members are welcome but we do encourage you to support KABT with your membership ($15/year, $5/year for students).

Employment opportunity

8:49 am in KABT News by Brad Williamson

CSE_1C_KUHorz
MASTER TEACHER
The Center for Science Education at the University of Kansas is developing a pool of qualified candidates for the position of full-time UKanTeach Master Teacher. Information about the UKanTeach Program can be found at www.UKanTeach.ku.edu. Required Qualifications: masters degree, teaching licensure, three years teaching and outstanding teaching ability in mathematics or science. Go to https://jobs.ku.edu/ and search for position #00208300 for a complete position description & to submit application materials. Application review begins April 21 and continues as needed. EO/AA Employer
Quick link:  http://jobs.ku.edu/applicants/Central?quickFind=92448

OBTA 2010 nominations

2:12 pm in KABT News by Harry McDonald


2010 OBTA NOMINATIONS FOR KANSAS
We are looking for this year’s nominations for the Kansas OBTA.
The National Association of Biology Teachers invites nominations for the Kansas Outstanding Biology Teacher Award for 2010. All biology/life science instructors (grades 7-12) with at least three years teaching experience in public, private, or parochial schools are eligible and self-nominations are invited. NABT membership is not a requirement for consideration; however, a major portion of each nominee’s career must have been devoted to the teaching of biology and/or life science. Unsuccessful candidates may be re-nominated in subsequent years. Colleagues, administrators, students, the teacher candidates themselves, or anyone competent to judge the candidate’s teaching effectiveness can nominate a teacher to receive the award. Candidates will complete a form summarizing their professional experience, academic background, and educational philosophy and provide four recommendations from colleagues, students, etc. The criteria for the award include teaching ability and experience, cooperativeness in school and the community, inventiveness, initiative, and student-teacher relationship. Winners receive a special gift from Pearson, a microscope from Leica Microsystems, Inc., a one year complimentary membership in NABT plus certificates and a pin from NABT. In addition, recipients will be honored at an awards ceremony at the annual NABT National Professional Development Conference (to be held November 3-6, in Minneapolis ).
Please send the name and address of your nominee (including phone number and e-mail) to Sandy Collins, West Jr. High School, 2700 Harvard Road, Lawrence, KS 66049, or by e-mail to scollins@usd497.org. E-mail nominations will be acknowledged by a reply. You may also nominate someone by using the nomination form available at www.nabt.org. The deadline for nominations is March 5, 2010..

I look forward to hearing from you. Thank you for your helping NABT honor an outstanding biology teacher from Kansas.
Sandy Collins
Kansas OBTA Director

More Citizen Science–Help out the BioSurvey

9:06 am in ID challenge, KABT News, Nature, Student Research Ideas by Brad Williamson

George Pisani and Bill Busby are looking for help.  You, your students and other interested parties can help expand the knowledge of two Eastern Kansas snakes:  Red-bellied and Smooth Earth Snakes.  Note that these are some of the earliest snakes to show up in the spring (March).  Spread the word to others in your community.  If you want to participate you’ll need to get going. Here are the details:


Smooth Earth Snake and Redbelly Snake Population Survey

Kansas Biological Survey (KBS) is conducting a survey of these two Kansas snakes recognized as Threatened in the State. We are looking for new populations and ask that students and teachers in the eastern counties of Kansas be on the lookout for these species in your area, and report sightings to us using the report form available at http://people.ku.edu/~gpisani/SWGform.html. Sightings must be confirmed by us, either by a live specimen (which may be released at capture point after we confirm identification) and/or high-quality photograph. We also need detailed documentation of habitat in which you may find them! If you find either species, note the area well and contact us ASAP! We especially need people to help us in Linn and Anderson counties; email us as soon as possible if you can help.

Both species are cool-weather snakes, and are among the very earliest to emerge from hibernation. Look for them under cover objects (tin, rocks, wood) from early March on (depending upon temperature). A great way to locate these snakes is to distribute 2ftx4ft pieces of salvaged barn tin (the corrugated kind) in likely habitat, especially edge zones between woods and unmowed grass areas. Part of this effort is to determine just what sorts of habitat both species prefer, so don’t overlook pastures, woods , or whatever habitat is in your area.. Spread some tin [with landowner permission]; see what comes in! And don’t forget to remove the tin when done sampling an area..
For an overview of current Kansas records of these species, visit the Kansas Herpetofaunal Atlas pages from links on our web site (above).

To add incentive, we will award publications to people with the most confirmed sightings in new localities during 2010 as follows:

Most new localities reported: A copy of 2nd printing (1980) Autecology of the Copperhead 1960 by Henry S. Fitch and also a copy of 2nd printing (1991) Reproductive Cycles in Lizards and Snakes 1970 by Henry S. Fitch.
Second place, most new localities reported: CHOICE OF ONE OF THE FOLLOWING- a copy of 2nd printing (1980) Autecology of the Copperhead 1960 by Henry S. Fitch and also a copy of 2nd printing (1991) Reproductive Cycles in Lizards and Snakes 1970 by Henry S. Fitch.
Third place, most new localities reported:  A copy of Biology, status and management of the Timber Rattlesnake (Crotalus horridus): A guide for conservation (1993), by William S. Brown.

George Pisani                                                Bill Busby
gpisani@ku.edu                                            wbusby@ku.edu

A Chance to Involve your Students in Citizen Science

4:26 pm in KABT News, Nature, Student Research Ideas by Brad Williamson

A post just came through the KS-Bird list about an interesting Cornell Citizen science program:

The Rusty Blackbird Blitz

Rusty Blackbirds are in decline and Kansas is part of their winter range.  This “blitz”/survey is set up for the first two weeks of Feb.  Check out the link for protocols.  If you decide to get out and count blackbirds don’t just report to eBird;  share your experience here on the KABT BioBlog.

An excerpt from the Cornell eBird website:

January 11, 2010
Participate in the Second Annual Rusty Blackbird Blitz! Singing male Rusty Blackbird, Alaska. Photo by David Shaw (www.wildimagephoto.com).

Populations of Rusty Blackbirds are crashing! Their numbers have plummeted by as much as 88-98% over the last few decades, according to data gathered between 1966 and 2006 for the North American Breeding Bird Survey and Christmas Bird Count. A species that was once considered to be abundant is rapidly disappearing before our eyes. Your observations can help save this species by arming scientists with critical information about its ecology. The Rusty Blackbird Working Group has developed the Rusty Blackbird Blitz, a winter survey whose goal is to count Rusty Blackbirds range-wide just prior to spring migration.  From 30 January – 15 February, search for Rusty Blackbirds in your area and report your observations to eBird.

JCCC – College Scholars Program Lecture

11:33 am in KABT News by Eric Kessler

Understanding the Role of the Dynein/Dynactin Motor in Neurodegenerative Diseases

Kincaid

by Dr. Margaret Kincaid, Associate Professor, Science

6:30 pm reception and 7 pm lecture, Wednesday, February 10, 2010
M.R. and Evelyn Hudson Auditorium at Johnson County Community College

Intracellular trafficking plays an important role in a range of human disease. As a basic scientist, Kincaid is looking at one component of intracellular trafficking – the dynein/dynactin motor complex. Dynein is a motor molecule in cells that converts chemical energy into the mechanical energy of movement. Dynactin is needed to activate dynein activity. Kincaid’s model gives insight into how mutations associated with the motor complex may contribute to neurodegenerative diseases, in particular lateonset diseases associated with motor neurons. A greater understanding of dynactin-dependent dynein movement may lead to potential treatment therapies.

In her evening lecture, Kincaid will present her most recent data that corroborates a working model for how dynactin regulates the function of dynein inside cells in order to transport cargo along “highways” within cells. She will explain the role the motor complex plays in human diseases such as amyotrophic lateral sclerosis (ALS) or Lou Gehrig’s disease, Alzheimer’s disease, Parkinson’s disease and Huntington’s disease. In the daytime lecture, Kincaid will explain some laboratory techniques she is using to determine how dynactin affects dynein-dependent transport inside cells — techniques such as an in vitro bead-based motility assay and fluorescent tagged molecules within mammalian cells. She will look at how the research is used to determine the effects of dynactin mutants, including mutations linked to ALS.

Kincaid has a bachelor’s degree in biology, a master’s degree in cell and molecular biology, and a PhD in cell biology and biophysics and molecular biology and biochemistry from the University of Missouri-Kansas City. She currently is a postdoctoral fellow in the laboratory of Dr. Stephen King, School for Biological Sciences, UMKC. Kincaid says her lectures will be of interest to JCCC faculty and students who are interested in how basic science research can be applied to human diseases and how a complex biological process is studied in the laboratory.

Hope to see you there!

Wikipedia: Not so evil after all

3:55 pm in KABT News by jwitters

Wikipedia receives plenty of disparagement these days in the world of education, but much of the disgruntlement is misplaced or is at least too narrowly focused on Wikipedia as perhaps the most conspicuous, convenient target. The vehemence of the anti-Wikipedia sentiments from fellow educators can sometimes be downright intimidating, but I would like to argue briefly on behalf of Wikipedia’s science topic pages as one useful tool in science education and research.

screenshot from Wikipedia's "sequence alignment" page

Wikipedia can be a powerful tool for learning; however, just as a shovel should neither be faulted for failing to be a scalpel nor accused of missing the mark as a jackhammer, Wikipedia is a tool, not the tool. Wikipedia cannot be expected to take the place of peer-reviewed scholarly publications, even though some of the entries could likely pass muster if it came to it. While Wikipedia has historically suffered in the eyes of educators from the stigma of untrustworthiness, I would ask anyone whether the majority of other readily accessed sources on the web are much more reliable, particularly for the sort of topics and subjects most likely to be looked up by the public. If anything, Wikipedia’s explicit construction rules inspire a level of healthy skepticism that ought to be just as appropriate for other web content. To the extent that “Wikipedia” has become fashionable shorthand for much of our web content and its ills, it reflects both Wikipedia’s immense success and the need for educators to more clearly articulate and address our concerns regarding web content in general.

So, at the fingertips of an educator or student, what is Wikipedia? It is a tool for quickly accessing answers to questions, where a nuanced piece of scholarly research is utter overkill, and it is a starting point for more exhaustive research. Is it utterly reliable? No. But then neither are the decade-old biology reference texts on my shelf if I want to know more about the role of microRNAs in gene regulation, for example. Does Wikipedia provide the authoritative content of a refereed review paper from a scientific journal? Not necessarily, but it may get me closer to finding that paper. In the meantime, a series of Wikipedia pages can help me begin to grasp the general topography of a topic I poorly understand, and even help me make much better sense of the jargon and verbage avalanching at me from the pages of the peer-reviewed papers and books sitting in my lap.

You think I jest? Perhaps a simple example will suffice. My turning point regarding Wikipedia came this last summer in the bowels of the Natural History Museum at the University of Kansas. I had just begun a stint working under an NSF Research Experience for Teachers grant in the Herpetology Department. My task was to extract some DNA from a battery of frogs from Africa, isolate some particular fragments, determine their sequences, and then plug those data into larger datasets so that we could refine our understanding of the evolutionary history of those frogs relative to what was already known about them. The chief difficulty was that my knowledge of everything from PCR to phylogenies was “teaching knowledge” more of the general, conceptual sort and I really had no idea how it all worked when plunked down in the lab. Between runs up to the molecular lab on the next floor, I camped in front of a computer in the Herp offices with a pile of books and papers attempting to better understand what I was doing, both functionally and conceptually. Bouncing back and forth between the real and virtual pages, I quickly found that perhaps five or six out of the eight or so simultaneously running browser pages were opened to some topic in Wikipedia. No Hollywood starlets. No controversial periods in American history. No biographies of prominent politicians. I was trying to figure out “bootstrapping,” “Bayesian inferences,” “sequence alignment,” effects of “annealing temperatures” in PCR sensitivity, “noise-signal ratios” in “capillary sequencing,” and much, much more in a short period of time.

from Wikipedia's "chi-squared distribution" page

If anything, I too often discovered that Wikipedia has many science-related pages that are written by and for people immersed in their relatively arcane field of study and thus required ample use of the imbedded links to tease out a basic understanding of the page I originally looked up. Try looking up “chi-squared distribution” for a little flavor of this. I felt fairly confident in much of that information solely on the basis of what I call “safety in obscurity,” in addition to finding that I never ran across meaningful discrepancies between my printed and virtual pages. Since that time I have made frequent use of Wikipedia for both “short answer” and “jumping-off point” purposes. I have been seldom disappointed.

I knew a teacher who had a small poster taped to the front of his desk: “Think for yourself – the teacher may be wrong.” This is some refreshing truth in advertisement which we might do well to help our students also to apply to websites, textbooks, hypotheses, and so on. Teaching that set of skills is very difficult and I claim no special mastery of that pedagogical thicket. In light of the difficulty, one alternative is to try to teach students to stick with only “trustworthy” sources of information, though they may be prohibitively difficult to access, unnecessarily jargoned for the purpose at hand, and ultimately only relatively more trustworthy.

Jeff Witters

Job Opportunity

9:48 am in KABT News by Brad Williamson

Last year the KABT Spring Field trip journeyed out to the new Wetlands Museum at Cheyenne Bottoms—they have an job opening:

Educator, Kansas Wetlands Education Center, Fort Hays State University.
Full-time 12 month, nontenure track educator with specialization in
environmental education, ornithology, ecology, conservation biology,
wildlife management, or other related area of expertise.  Required
qualifications:  an earned bachelor?s degree in in an education
discipline, and/or a biological discipline that relates to wetlands.
Preferred qualifications:  an earned master?s degree and teaching
experience in formal and informal settings.  Priority given to
applications received by March 1, 2008.  Further information available at
http://bigcat.fhsu.edu/positions/admn.php?job=181 or by contacting Curtis Wolf, Manager
Kansas Wetlands Education Center, P.O. Box 618, Great Bend, KS
(620-786-7456), cjwolf@fhsu.edu.  Finalists will have consented to and
successfully completed a criminal background check.  FHSU is an AA/EEO
employer.  Minorities, women, persons with disabilities, and Vietnam era
veterans are specifically encouraged to apply.