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Do Gene Patents Kill?

October 2, 2011 in Events

The Controversy Surrounding DNA Patenting

Thursday, October 13
6:00 pm
UMKC Law School
Thompson Courtroom

Patent Attorney Dan Ravicher  faces off against Hans Sauer, representative for the biotech industry, in what promises to be a lively debate about the future of gene patenting.

For more details on the controversy and debate participants, click here.

 

The Human Genome at Ten: Nature’s Special

February 12, 2011 in KABT News

 

This Nature special contains 26 separate resources categorized into editorials, reviews, perspectives, comments, books & arts, technology features, features, audio & video, careers, and elsewhere in Nature sections (at least nine of these are free access).  Comments from Eric Lander, Francis Collins, and Craig Venter are all included as well as many others. 

It would be interesting to compare the what these symbols of genomic science wrote for these competing publications.

There is even an iPad app for experiencing this special issue.  Whether or not you have an iPad you should really check out this complation of information on the genome.  It’s hard to believe its been 10 years.

Human Genome 10th Anniversary: Science’s Special

February 11, 2011 in Teaching Resources

In February 2001, Science and Nature published two papers that provided the first detailed look at the nearly complete sequence of the human genome. Science is pleased to present a special month-long series celebrating the 10th anniversary of that momentous achievement, including News features and brief essays that explore the impacts of the genomics revolution on scientists and society.

Visit this special section of the online issue of Science by clicking on the image above, or view and save a pdf copy of the two parts of the series that have been published so far.  Each pdf contains a collection of brief essays that should be assessible by most high school biology students.

NPR Science – January 31, 2011

February 5, 2011 in KABT News, Nature, Teaching Resources

Week of January 31, 2011

Click on the logo above to go the the NPR Science site, or use the links below to navigate one of the stories that I thought may interest you.

I tried to embed these videos for snow day viewing pleasure but I couldn’t.  All of these videos are about the snowflake research conducted by Dr. Ken Libbrecht, a Caltech physicist.

American Scientist: Pizza Lunch Podcast

February 4, 2011 in Teaching Resources, Technology

 

 

 

 

 

American Scientist Pizza Lunches are informal lectures where scientists present new research to an audience of non-scientists.  The talks are hosted in Research Triangle Park, North Carolina, at the headquarters of Sigma Xi, the Scientific Research Society, the publisher of American Scientist magazine.  Originally intended to help inform local science communicators about current and controversial topics, the Pizza Lunch talks are now available to anyone online, and new talks are posted periodically during the academic year.

Download individual talks through following the links below (clicking on the image above will take you to the general Pizza Lunch Podcast website).

  1. Whole Genome Analysis in the Clinic
    James Evans, clinical researcher in genetics at the University of North Carolina
    Evans urges us to support genomics medicine research but asks us to temper our enthusiasm until it becomes a proven tool. (April 20, 2010)
  2. Genomic and Personalized Medicine
    Geoffrey Ginsburg, director of the Center for Genomic Medicine, Duke University
    Ginsburg presents advances and ongoing research in personalized medicine, from prescribing cancer drugs to predicting flu symptoms. (March 30, 2010)
  3. Metapopulation Dynamics of Oyster Restoration in Pamlico Sound, NC
    David Eggleston, director of the Center for Marine Science and Technology, North Carolina State University
    Eggleston discusses the challenges of conserving and restoring North Carolina coastal ecosystems, particularly oyster reefs. (January 26, 2010) 
  4. An Empire Lacking Food: The Astonishing Existence of Life on the Deep Seafloor
    Craig McClain, assistant director of science, National Evolutionary Synthesis Center

    McClain explores how the meager availability of food on the deep seafloor shapes the ecology and evolution of the animals that live there. (December 15, 2009)
  5. The Evolution of the Human Capacity for Killing at a Distance
    Steven Churchill, professor of evolutionary anthropology, Duke University
    Churchill presents his research on the evolutionary origins of projectile weaponry, and how weapon use changed interactions between humans and other species—including, perhaps, the Neandertals. (October 20, 2009)
  6. Our Energy Future: Science and Technology Challenges for the 21st Century
    Thomas Meyer, director, Solar Energy Research Center, University of North Carolina, Chapel Hill
    Meyer discusses the status of the world’s energy supply. In particular, he presents the idea that the sun’s energy could be used to make fuels from water and carbon dioxide for heating, transportation and energy storage. (September 24, 2009)
  7. Everything Is Dangerous: A Controversy
    S. Stanley Young, director of bioinformatics, National Institute of Statistical Sciences
    Young critiques statistical analysis by some epidemiologists, especially their multiple testing of data sets obtained from observational studies. (April 22, 2009)
  8. From Cloning to Stem Cells: How Can Pigs Help Us Solve Problems in Human Medicine?
    Jorge Piedrahita, professor of genomics, North Carolina State University College of Veterinary Medicine

    Piedrahita describes his research with cloned swine and how their abnormal growth provides insight into human placental defects, the ways transgenic pigs may help grow human tissue and how pigs could help advance stem cell therapies. (March 25, 2009)

I discovered this site via a twitter link today and thought it might provide another means of bringing scientists, although virtually, into the classroom.  Otherwise, if you don’t have a subscription to the American Scientist, it is one of my favorite periodicals.

NPR Science

January 22, 2011 in KABT News, Teaching Resources

Week of January 17, 2011

Click on the logo above to go the the NPR Science site, or use the links below to navigate one of the stories that may interest you.

I imagine that Brad could set up a permenant link for the NPR Science link on the KABT Blog Site but I wonder if it would just sit there unclicked.  He could likely add the apppropriate RSS feed as well which may inspire more use of their programing.  In the mean time, I figured that I might try to get in a weekly habit of posting NPR Science links that may appeal to KABT listeners.  If you would use this weekly feature, let me know via a comment.  Otherwise, I have no idea if this would be of use.

Although I occasionally share such stories in class, I am going to challenge myself to share each of audio stories above with my classes next week and see how they respond as well.  I’ll let you know how it goes with a comment next week.  These stories are good models for culminating work students could do to help them demonstrate understanding of particular topics of study while helping to popularize science as well.   If you already do such things in your classroom please share any thoughts, suggestions, etc… with a comment to this post.

Otherwise, if you have an iPhone, iPad, Android, etc… you should consider getting the NPR app.  I especially enjoy the NPR Science experience on the iPad.

Avida-Ed: Exploring Evolution in Silico

October 8, 2009 in Labs, Student Research Ideas, Teaching Resources, Technology

At the NABT Conference in Atlanta in the fall of 2007, Brad Williamson talked me and a few others who were loitering around to come to a workshop presentation on Avida-Ed software as a means of fostering inquiry of evolutionary processes.  After the presentation, Brad suggested that I write a post about the experience.  At the time, I didn’t have much to say.

Having had time to play around with Avid-Ed and to make my way through most of the unedited model lessons downloadable from the Avida-Ed website, I have decided to make the post.  The best place to start is to download the software developed by Robert T. Pennock from the Avida-Ed website at Michigan State University, and to read the Discover magazine article written by Carl Zimmer highlighting Robert Pennock’s development and use of the research version of the software to study the process of evolution (The first activity below has pre-activity questions that require students to read this article).  The links below will get you that far.

  1. Avida-Ed Website
  2. Testing Darwin by Carl Zimmer in February 2005 edition of Discover magazine.

If you are a self learner, after downloading the Avida-Ed, open it, drag the @ancestor into the black area of the Petri Dish window to the right, select the play button, and have fun.  Otherwise, keep reading…

Well, as I said, I have had the time to make my way through the unedited model lessons posted on the Avida-Ed website.  In effort to prepare to introduce my freshman honors biology and AP Biology student for the software, I have cut and pasted, edited, and created (in some cases) more detailed step-by-step instructions for the activities presented in their models lesson.  In a few cases, I have even collected and attached data in a teachers section at the end of the student friendly documents that help you understand what the students will be doing prior to your own exploration of the software.

Explorations in Evolution Series

  1. I – Introduction to Avida-Ed
  2. II – Observing an Instance of Evolution in Avida-Ed
  3. III – How do Resource Availability & Mutation Rate influence Avidian Fitness?
  4. IV – Observing Mutations in the Genomes of Evolving Avidians
  5. V – Common Misconceptions of Evolution

I look forward to your comments and criticism of the activities but realize that I am just beginning to use these activities in my class for a second time.

As a justification for activities such as these, if you take the time to read the Bio2010 published by the National Academies as well as the most recent bulletin from HHMI (read Thinking like an Engineer and Add 56), you will quickly learn that we should be doing more to motivate our keen biology students to appreciate the importance of other scientific perspectives (mathematics, computer science, physic and engineering).  Similarly, we should be reaching out equally to those that are already bent toward study in these other fields and show them that they can fulfill there interests while helping to make new discoveries in the biological sciences.

Download the non-education version of Avida.

Enjoy!