{"id":971,"date":"2009-10-08T08:26:12","date_gmt":"2009-10-08T14:26:12","guid":{"rendered":"https:\/\/www.kabt.org\/?p=971"},"modified":"2009-10-08T09:13:29","modified_gmt":"2009-10-08T15:13:29","slug":"avida-ed-revisited","status":"publish","type":"post","link":"https:\/\/www.kabt.org\/?p=971","title":{"rendered":"Avida-Ed: Exploring Evolution in Silico"},"content":{"rendered":"

\"\"<\/a><\/p>\n

At the NABT Conference in Atlanta in the fall of 2007, Brad Williamson talked me and a few others who were loitering around to come\u00a0to a workshop presentation on Avida-Ed software\u00a0as a means of fostering inquiry\u00a0of evolutionary processes.\u00a0 After the presentation, Brad suggested that I write a post about the experience.\u00a0 At the time, I didn’t have much to say.<\/p>\n

Having\u00a0had time to play around with Avid-Ed and to make my way through most of the unedited model lessons\u00a0downloadable\u00a0from\u00a0the Avida-Ed\u00a0website, I have decided to make the post.\u00a0 The best place to start is to download the software developed by Robert T. Pennock from the Avida-Ed website at Michigan State University, and to read the Discover magazine article written by Carl Zimmer highlighting Robert Pennock’s\u00a0development and use of the research version of the software to study the process of evolution (The first activity below has pre-activity questions that require students to read this article).\u00a0 The links below will get you that far.<\/p>\n

    \n
  1. Avida-Ed Website<\/a><\/li>\n
  2. Testing Darwin<\/em><\/a> by Carl Zimmer in February 2005 edition of Discover magazine.<\/li>\n<\/ol>\n

    If you are a\u00a0self learner, after downloading the Avida-Ed, open it, drag the @ancestor into the black area of the Petri Dish window to the right, select\u00a0the\u00a0play button, and have fun.\u00a0 Otherwise, keep reading…<\/p>\n

    Well, as I said, I have had the time to make my way through the unedited model lessons posted on the Avida-Ed\u00a0website.\u00a0 In effort to prepare to introduce my freshman honors biology and AP Biology student\u00a0for the software, I have cut and pasted, edited, and created (in some cases) more detailed step-by-step instructions for the activities presented in their models lesson.\u00a0 In a few cases, I have even collected and attached data in a teachers section at the end of the student friendly documents that help you understand what the students will be doing prior to your own\u00a0exploration of the software.<\/p>\n

    Explorations in Evolution Series<\/p>\n

      \n
    1. I – Introduction to Avida-Ed<\/a><\/li>\n
    2. II – Observing an Instance of Evolution in Avida-Ed<\/a><\/li>\n
    3. III – How do Resource Availability & Mutation Rate influence Avidian Fitness?<\/a><\/li>\n
    4. IV – Observing Mutations in the Genomes of Evolving Avidians<\/a><\/li>\n
    5. V – Common Misconceptions of Evolution<\/a><\/li>\n<\/ol>\n

      I look forward to your comments and criticism of the activities but realize that\u00a0I am just beginning to use these activities in my class for a second time.<\/p>\n

      As a justification for activities such as these, if you take the time to read the Bio2010<\/a> published by the National Academies as well as the most recent\u00a0bulletin from HHMI<\/a> (read Thinking like an Engineer<\/em> and Add 56<\/em>), you will quickly learn that we should be doing more to motivate our keen biology students to appreciate the importance of other scientific perspectives (mathematics, computer science, physic and engineering).\u00a0 Similarly, we should be reaching out equally to those that are already bent toward study in\u00a0these other fields\u00a0and show them that they can fulfill there interests while helping to make new discoveries in the biological sciences.<\/p>\n

      Download the non-education version<\/a> of Avida.<\/p>\n

      Enjoy!<\/p>\n","protected":false},"excerpt":{"rendered":"

      At the NABT Conference in Atlanta in the fall of 2007, Brad Williamson talked me and a few others who were loitering around to come\u00a0to a workshop presentation on Avida-Ed software\u00a0as a means of fostering inquiry\u00a0of evolutionary processes.\u00a0 After the presentation, Brad suggested that I write a post about the experience.\u00a0 At the time, I
      + Read More<\/a><\/p>\n","protected":false},"author":30,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"om_disable_all_campaigns":false,"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"_s2mail":"","_uf_show_specific_survey":0,"_uf_disable_surveys":false,"footnotes":""},"categories":[9,38,8,21],"tags":[56,57,58,11,61,60,59],"class_list":["post-971","post","type-post","status-publish","format-standard","hentry","category-labs","category-student-research-ideas","category-teaching-resources","category-technology","tag-avida","tag-avida-ed","tag-digital-organisms","tag-evolution","tag-genome","tag-mutation","tag-natural-selection"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/www.kabt.org\/index.php?rest_route=\/wp\/v2\/posts\/971","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.kabt.org\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.kabt.org\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.kabt.org\/index.php?rest_route=\/wp\/v2\/users\/30"}],"replies":[{"embeddable":true,"href":"https:\/\/www.kabt.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=971"}],"version-history":[{"count":35,"href":"https:\/\/www.kabt.org\/index.php?rest_route=\/wp\/v2\/posts\/971\/revisions"}],"predecessor-version":[{"id":4144,"href":"https:\/\/www.kabt.org\/index.php?rest_route=\/wp\/v2\/posts\/971\/revisions\/4144"}],"wp:attachment":[{"href":"https:\/\/www.kabt.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=971"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.kabt.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=971"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.kabt.org\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=971"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}